I am not an expert on this subject in particular, but I skimmed through the above referenced article. While I understand the sensationalism of the original article from the OP, there are a few things to consider. Frequently, popular press articles are written by individuals with no scientific background. The reporter will call a scientist and ask questions. Many scientists are poor communicators, or they speak at a level that is so technical and full of jargon that it sounds like a foreign language to a lay person. Reporters pick up on what they can, and frequently the story reported has only shades of truth to it. Basically, they know enough to be dangerous.
Keeping that in mind, it is always a good idea to go back to the original source of the science (or the peer reviewed scientific article in a reputable journal). I don't pretend to have done extensive research on this subject matter, nor do I intend to, but I an extremely quick search seems to indicate that these articles are not new.
The Plos One article cited by Hodge
Male Microchimerism in the Human Female Brain is from 2012. This is ancient in terms of genetic research, particularly a study that claims to be cutting edge. A few things I noticed reading through the article...
1) At the beginning of the discussion section it states that changes in blood brain barrier permeability occur during pregnancy which could allow for cells to cross into the brain. Having sex does not indicate pregnancy, hence this "change" would not yet have occurred.
2) The authors repeatedly state that the most likely source of the male DNA in the brain is from a male fetus. Other options were through a male twin or blood transfusion. They also state the sample size was modest and pregnancy history was largely not known.
3) Other tissues were not sampled for comparison. In other words, only the brain tissue was sampled. They also state, that the male cells appear "to integrate and generate specific cell types in tissues". I would assume this to mean that if the DNA can integrate into the individuals genome, and other cells were not tested, theoretically, some of this material could have been passed along from a previous generation. Granted, this could be a stretch and would depend on it integrating into sex cells.
Again, I am not an expert on this, nor have I done anything but skim the discussion and bits and pieces of the materials and methods of the linked Plos One article, but nowhere do I see it mentioned that these male cells in the brain come from having sex with no resulting male pregnancy ( at least in this article).
I don't care to explore further. Lol.